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Clarify Tool Amdocs Wiki Upgrade To AIt can output to PHYLIP and Fluxus for building phylogenetic trees, etc. STR results, SNPs, and Genealogies for SAPP to use in building the phylogenetic tree. See the blog post from Maurice Gleeson L2 MHT - difficult to place people for a description of its use. Without SNP confirmation prediction for low-resolution haplotpyes (Y-STR12 to Y-STR24) has a low value of confidence and convergence can be a problem. For many haplogroups Y-STR25 to Y-STR37 has an acceptable confidence level while for some young haplogroups with rapid diversification and expansion like in R1b even Y-STR67 is not enough to discriminate the correct sublineage with confidence. The methodology is explained in a preprint by David Poznik Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men. This program uses input that is compatible with Dean McGees Y-DNA Utility, but is limited to 37 markers. The tool is described in the 2021 paper by Chen, Lu, Lu an Xu YLineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data. See the review by Debbie Kennett clarifY DNA - a new Y-SNP analysis service. Y-SNP analysis versus Y-haplogroup predictor in the Slovak population Anthropol Anz 2014;71(3):275-85.
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